Jump to content

LiteMol:Use Cases

From WebChemistry Wiki
Revision as of 15:35, 22 July 2016 by Lukas (talk | contribs)


This page shows instructions for the most typical and most useful operations that LiteMol can perform.


Basics

{{#evt: service=youtube |id=https://www.youtube.com/watch?v=sG-8uU5gvoI |alignment=center |dimensions=640x480 |autoresize=true |description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. }}



Visual Representations

LiteMol User Manual: Visuals

How to create and update visual representations of molecules, different types of representations and their parameters.



Visualization of Electron Density Maps

How to load electron density data and visualize density isosurfaces.

The video is being prepared.


Biological Assemblies And Crystal Symmetry

Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.

The video is being prepared.


Visualizing PDBe Sequence Annotations And Validation Reports

How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.

The video is being prepared.


Using Selections

How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains.

The video is being prepared.