SecStrAnnotator:UserManual: Difference between revisions
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'''SecStrAnnotator''' is a command line tool for annotation (naming) of '''secondary structure elements (SSEs)''' in protein structures. It is template-based, meaning that a structurally similar template protein with annotated SSEs is a part of the input. | '''SecStrAnnotator''' is a command line tool for annotation (naming) of '''secondary structure elements (SSEs)''', namely helices and β-strands, in protein structures. It is template-based, meaning that a structurally similar template protein with annotated SSEs is a part of the input. | ||
'''SecStrAnnotator''' alone can be used for '''one-to-one annotation'''. This means that it takes an annotated template protein ''T'' and a query protein ''Q'', it finds SSEs in the query protein ''Q'', and annotates the SSEs (assigns them names) in a way that best reflects the annotation of the template ''T''. | '''SecStrAnnotator''' alone can be used for '''one-to-one annotation'''. This means that it takes an annotated template protein ''T'' and a query protein ''Q'', it finds SSEs in the query protein ''Q'', and annotates the SSEs (assigns them names) in a way that best reflects the annotation of the template ''T''. | ||
'''SecStrAnnotator Suite''' is a set of additional scripts which can be used for '''one-to-many''' annotation. This means that we have a whole protein family and one of its members serves as the template ''T''. The result is then the annotation of all other members of the family. | '''SecStrAnnotator Suite''' is a set of additional scripts which can be used for '''one-to-many''' annotation. This means that we have a whole protein family and one of its members serves as the template ''T''. The result is then the annotation of all other members of the family. | ||
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Revision as of 21:15, 28 April 2018
SecStrAnnotator is a command line tool for annotation (naming) of secondary structure elements (SSEs), namely helices and β-strands, in protein structures. It is template-based, meaning that a structurally similar template protein with annotated SSEs is a part of the input.
SecStrAnnotator alone can be used for one-to-one annotation. This means that it takes an annotated template protein T and a query protein Q, it finds SSEs in the query protein Q, and annotates the SSEs (assigns them names) in a way that best reflects the annotation of the template T.
SecStrAnnotator Suite is a set of additional scripts which can be used for one-to-many annotation. This means that we have a whole protein family and one of its members serves as the template T. The result is then the annotation of all other members of the family.