LiteMol:Use Cases: Difference between revisions
No edit summary |
No edit summary |
||
| Line 5: | Line 5: | ||
=Basics= | =Basics= | ||
[[File:LiteMol-VideoBasics.png|200px|thumb|left|LiteMol User Manual: Basics|link=https://www.youtube.com/embed/sG-8uU5gvoI]] | |||
Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | ||
<br style="clear:both" /> | <br style="clear:both" /> | ||
=Visual Representations= | =Visual Representations= | ||
[[File:LiteMol-VideoVisuals.png|200px|thumb|left|LiteMol User Manual: Visuals|link=https://www.youtube.com/embed/9EzoWh1_mFI]] | |||
How to create and update visual representations of molecules, different types of representations and their parameters. | How to create and update visual representations of molecules, different types of representations and their parameters. | ||
<br style="clear:both" /> | |||
=Visualization of Electron Density Maps= | =Visualization of Electron Density Maps= | ||
How to load electron density data and visualize density isosurfaces. | How to load electron density data and visualize density isosurfaces. | ||
''The video is being prepared.'' | |||
| Line 25: | Line 31: | ||
Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice. | Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice. | ||
''The video is being prepared.'' | |||
| Line 30: | Line 38: | ||
How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data. | How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data. | ||
''The video is being prepared.'' | |||
| Line 35: | Line 45: | ||
How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains. | How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains. | ||
''The video is being prepared.'' | |||
Revision as of 17:49, 21 July 2016
This page shows instructions for the most typical and most useful operations that LiteMol can perform.
Basics
Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.
Visual Representations
How to create and update visual representations of molecules, different types of representations and their parameters.
Visualization of Electron Density Maps
How to load electron density data and visualize density isosurfaces.
The video is being prepared.
Biological Assemblies And Crystal Symmetry
Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.
The video is being prepared.
Visualizing PDBe Sequence Annotations And Validation Reports
How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
The video is being prepared.
Using Selections
How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains.
The video is being prepared.