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+__NOTOC__
+=Structural Pattern Identification and Validation=
+{{col-begin}}
+{{col-4}}
+=== [[PatternQuery:UserManual | PatternQuery]] ===
+:''Identification of molecular (sub)structures in the entire Protein Data Bank''
+{{col-4}}
+=== [[MotiveValidator:UserManual | MotiveValidator]] ===
+: ''Validation of annotation of ligands and non-standard residues in the protein structures''
+{{col-4}}
+=== [[ValidatorDB:UserManual | Validator<sup>DB</sup>]] ===
+:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''
+{{col-4}}
+=== [[SecStrAnnotator:UserManual | SecStrAnnotator]] ===
+:''Annotation of the secondary structure elements in the protein structures''
+{{col-end}}
+=EEM Charges Computation=
+{{col-begin}}
+{{col-2}}
+=== [[ChargeCalculator:UserManual | AtomicChargeCalculator]] ===
+:''Calculation of EEM charges for the small molecules as well as entire protein complexes''
+{{col-2}}
+=== [[NEEMP:UserManual | NEEMP]] ===
+:''Toolkit for parametrization, calculaton and validation of EEM charges''
+{{col-end}}
+=Molecular Visualization=
+=== [[LiteMol:UserManual | LiteMol]] ===
+:''Comprehensive visualization of (extremely large) protein structures''
+=Bioinformatics tools=
+=== [[CrocoBLAST:UserManual | CrocoBLAST]] ===
+:''Optimized parallel implementation of local sequence alignment algorithms''
+Current version: 1.16.11.04 (see the [[CrocoBLAST:ReleaseNotes | Release notes]])