PatternQuery:Command Line

This is help for version 1.0.14.11.28 or newer. The help text for other versions can be viewed using the --help command when running the application.

Running the Service

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The service can be executed using the command (latest .NET Framework required):

WebChemistry.MotiveQuery.Service.exe workingFolder configuration.json

In Linux (where available) and MacOS, the latest version the Mono Framework must be used to run the application:

mono WebChemistry.MotiveQuery.Service.exe workingFolder configuration.json

Alternatively, on Linux and MacOS, an official version of .NET Framework should become available during 2015.

Configuration

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The configuration is specified using the JSON format.

Configuration Example

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This is the general shape of the JSON input configuration.

{
  "InputFolders": [
    "c:\\TestData\\PDB\\SampleSet1"
  ],
  "Queries": [
    {
      "Id": "my_id",
      "QueryString": "Residues(\"NAG\")"
    }
  ],
  "StatisticsOnly": false,
  "CSAPath": "c:\\data\\csa.dat",
  "MaxParallelism": 8
}

There has to be exactly one configuration file for each validation run. Every value, as well as settings' names, is surrounded in quotation marks (" " or ' '). Backslashes (\) have to be escaped (\\). File system paths can be absolute as well as relative (/ works as well in paths).

Attributes

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InputFolders [ String[] ]

Queries [ QueryInfo[] ]

StatisticsOnly [ Boolean ]

CSAPath [ String ]

MaxParallelism [ Int32 ]

General Output Structure

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• WorkingDirectory - Working directory of the application.

• result - Directory containing the result of the computation.

• log.txt - Contains the console output of the application.
• status.json - Contains general information of the computation (running time, version, etc.).