SecStrAnnotator:UserManual: Difference between revisions
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===[[SecStrAnnotator:Introduction | Introduction]]=== | ===[[SecStrAnnotator:Introduction | Introduction]]=== | ||
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===[[SecStrAnnotator:OneToOne | Annotation of one query protein]]=== | ===[[SecStrAnnotator:OneToOne | Annotation of one query protein (one-to-one)]]=== | ||
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===[[SecStrAnnotator:OneToMany | Annotation of a whole protein family]]=== | ===[[SecStrAnnotator:OneToMany | Annotation of a whole protein family (one-to-many)]]=== | ||
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===[[SecStrAnnotator:Download | Download]]=== | ===[[SecStrAnnotator:Download | Download]]=== | ||
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Revision as of 00:46, 29 April 2018
SecStrAnnotator is a command line tool for annotation (naming) of secondary structure elements (SSEs), namely helices and β-strands, in protein structures. It is template-based, meaning that a structurally similar template protein with annotated SSEs is a part of the input.
SecStrAnnotator alone can be used for one-to-one annotation. This means that it takes an annotated template protein T and a query protein Q, it finds SSEs in the query protein Q, and annotates the SSEs (assigns them names) in a way that best reflects the annotation of the template T.
SecStrAnnotator Suite is a set of additional scripts which can be used for one-to-many annotation. This means that we have a whole protein family and one of its members serves as the template T. The result is then the annotation of all other members of the family.