Revision as of 12:05, 19 April 2017

{{#if: LiteMol is a powerful and blazing-fast cross-platform tool for handling 3D macromolecular data in the browser. Try it now! | LiteMol is a powerful and blazing-fast cross-platform tool for handling 3D macromolecular data in the browser. Try it now! |large }}

Classic features

Supports all major structural data formats (PDBx/mmcif, PDB, SDF).
All common visualization models ('balls-n-sticks'/cartoon/Cα-trace/VDW spheres/surfaces).
Displays x-ray electron densities and electric potential cryo-EM maps.
Available as a standalone viewer or as a [https://github.com/dsehnal/LiteMol library} for embedding into third party applications.

Advanced features

Introduces the BinaryCIF a compression format compatible with standard PDBx/mmCIF format greatly reducing amount of transferred data.
CoordinateServer allows for streaming only parts of the structure models relevant for user deemed visualization. This further decreases the amount of transferred data and facilitates near instant responsiveness even for huge structures like ribosomes and viral capsids. All in your web browser.
DensityServer allows instant access to full resolution user deemed slices of electron density (e.g. binding sites) and down sampled surface of the entire biomacromolecular structure.
Displays PDB validation reports and ValidatorDB ligand validation.
Displays sequence annotations from Pfam, InterPro, [www.cathdb.info CATH], SCOP, UniProt.
Visualizer which requires only an up to date web browser with no dependencies needed. Runs on all mobile devices.
Minimal memory footprint.

@@ Line 5: / Line 5: @@
 * All common visualization models ('balls-n-sticks'/cartoon/Cα-trace/VDW spheres/surfaces).
 * Displays x-ray electron densities and electric potential cryo-EM maps.
-* Available as a standalone viewer or as a library for embedding into third party applications.
+* Available as a [https://webchemdev.ncbr.muni.cz/LiteMol/Viewer/ standalone viewer] or as a [https://github.com/dsehnal/LiteMol library} for embedding into third party applications.
@@ Line 13: / Line 13: @@
 * Introduces the [https://github.com/dsehnal/BinaryCIF BinaryCIF] a compression format compatible with standard PDBx/mmCIF format ''greatly reducing'' amount of transferred data.
 * [https://webchem.ncbr.muni.cz/CoordinateServer CoordinateServer] allows for streaming only parts of the structure models relevant for user deemed visualization. This further ''decreases'' the amount of ''transferred data'' and facilitates ''near instant responsiveness'' even for huge structures like ribosomes and viral capsids. All in your web browser.
-* [http://webchem.ncbr.muni.cz/DensityServer DensityServer ] - allows ''instant access'' to full resolution slices of ''electron density'' (e.g. binding sites) and down sampled surface of the entire macromolecular structure.
+* [http://webchem.ncbr.muni.cz/DensityServer DensityServer ] allows ''instant access'' to full resolution user deemed slices of ''electron density'' (e.g. binding sites) and down sampled surface of the entire biomacromolecular structure.
 * Displays [https://www.wwpdb.org/validation/validation-reports PDB validation reports] and [[ValidatorDB:UserManual | ValidatorDB ligand validation]].
-* Displays ''sequence annotations'' from [http://pfam.xfam.org/ Pfam], [https://www.ebi.ac.uk/interpro/ InterPro], [www.cathdb.info CATH}, [http://scop.berkeley.edu/ SCOP], [http://www.uniprot.org/ UniProt].
+* Displays ''sequence annotations'' from [http://pfam.xfam.org/ Pfam], [https://www.ebi.ac.uk/interpro/ InterPro], [www.cathdb.info CATH], [http://scop.berkeley.edu/ SCOP], [http://www.uniprot.org/ UniProt].
-* The only visualizer which requires only an up to date ''web browser'' with no dependencies needed. Runs on all ''mobile devices''.
+* Visualizer which requires only an up to date ''web browser'' with no dependencies needed. Runs on all ''mobile devices''.
 * Minimal ''memory footprint''.
 [[Image:LiteMol-Performance.png|center|800px]]