LiteMol:Use Cases: Difference between revisions
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This page shows instructions for the most typical and most useful operations that LiteMol can perform. | This page shows instructions for the most typical and most useful operations that LiteMol can perform. | ||
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=Basics= | =Basics= | ||
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|description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | |description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | ||
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|description=How to load electron density data and visualize density isosurfaces. | |description=How to load electron density data and visualize density isosurfaces. | ||
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=Visualizing PDBe Sequence Annotations And Validation Reports= | |||
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|description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data. | |||
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Revision as of 15:38, 4 August 2016
This page shows instructions for the most typical and most useful operations that LiteMol can perform.
Basics{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=sG-8uU5gvoI | alignment=center | dimensions=640x480 | autoresize=true | description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.
}} |
Visual Representations{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=9EzoWh1_mFI | alignment=center | dimensions=640x480 | autoresize=true | description=How to load electron density data and visualize density isosurfaces.
}} |
Visualizing PDBe Sequence Annotations And Validation Reports{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=C91ArK0hduU | alignment=center | dimensions=640x480 | autoresize=true | description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
}} |
Visualization of Electron Density Maps
The video is being prepared.
Biological Assemblies And Crystal Symmetry
Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.
The video is being prepared.
Visualizing PDBe Sequence Annotations And Validation Reports
How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
The video is being prepared.
Using Selections
How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains.
The video is being prepared.