LiteMol:Use Cases: Difference between revisions
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This page shows instructions for the most typical and most useful operations that LiteMol can perform. | This page shows instructions for the most typical and most useful operations that LiteMol can perform. | ||
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=Basics= | =Basics= | ||
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|id=https://www.youtube.com/watch?v=sG-8uU5gvoI | |||
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|description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | |||
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=Visual Representations= | =Visual Representations= | ||
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|id=https://www.youtube.com/watch?v=9EzoWh1_mFI | |||
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|description=How to load electron density data and visualize density isosurfaces. | |||
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=Visualization of Electron Density Maps= | =Visualization of Electron Density Maps= | ||
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|id=https://www.youtube.com/watch?v=obOKHFyXftM | |||
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|description=How to visualize electron density maps. | |||
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=Biological Assemblies And Crystal Symmetry= | =Biological Assemblies And Crystal Symmetry= | ||
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|id=https://www.youtube.com/watch?v=n-9yScdVzV8 | |||
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|description=Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice. | |||
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=Visualizing PDBe Sequence Annotations And Validation Reports= | =Visualizing PDBe Sequence Annotations And Validation Reports= | ||
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|id=https://www.youtube.com/watch?v=C91ArK0hduU | |||
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|description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data. | |||
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=Using Selections= | |||
How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains. | |||
''The video is being prepared.'' | |||
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Latest revision as of 13:58, 6 August 2016
This page shows instructions for the most typical and most useful operations that LiteMol can perform.
Basics[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=sG-8uU5gvoI | alignment=center | dimensions=640x480 | autoresize=true | description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.
}} |
Visual Representations[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=9EzoWh1_mFI | alignment=center | dimensions=640x480 | autoresize=true | description=How to load electron density data and visualize density isosurfaces.
}} |
Visualization of Electron Density Maps[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=obOKHFyXftM | alignment=center | dimensions=640x480 | autoresize=true | description=How to visualize electron density maps.
}} |
Biological Assemblies And Crystal Symmetry[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=n-9yScdVzV8 | alignment=center | dimensions=640x480 | autoresize=true | description=Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.
}} |
Visualizing PDBe Sequence Annotations And Validation Reports[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=C91ArK0hduU | alignment=center | dimensions=640x480 | autoresize=true | description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
}} |
Using Selections[edit]How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains. The video is being prepared. |