Latest revision as of 14:41, 9 April 2020

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-'''MediaWiki has been successfully installed.'''
+__NOTOC__
-Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
+=Structural Pattern Identification and Validation=
+{{col-begin}}
+{{col-4}}
+=== [[PatternQuery:UserManual | PatternQuery]] ===
+:''Identification of molecular (sub)structures in the entire Protein Data Bank''
-== Getting started ==
+{{col-4}}
-* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
-* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
+=== [[MotiveValidator:UserManual | MotiveValidator]] ===
-* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
+: ''Validation of annotation of ligands and non-standard residues in the protein structures''
-* [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language]
+{{col-4}}
+=== [[ValidatorDB:UserManual | Validator<sup>DB</sup>]] ===
+:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''
+{{col-4}}
+=== [[SecStrAnnotator:UserManual | SecStrAnnotator]] ===
+:''Annotation of the secondary structure elements in the protein structures''
+{{col-end}}
+=EEM Charges Computation=
+{{col-begin}}
+{{col-2}}
+=== [[ChargeCalculator:UserManual | AtomicChargeCalculator]] ===
+:''Calculation of EEM charges for the small molecules as well as entire protein complexes''
+{{col-2}}
+=== [[NEEMP:UserManual | NEEMP]] ===
+:''Toolkit for parametrization, calculaton and validation of EEM charges''
+{{col-end}}
+=Molecular Visualization=
+=== [[LiteMol:UserManual | LiteMol]] ===
+:''Comprehensive visualization of (extremely large) protein structures''
+=Bioinformatics tools=
+=== [[CrocoBLAST:UserManual | CrocoBLAST]] ===
+:''Optimized parallel implementation of local sequence alignment algorithms''
+Current version: 1.16.11.04 (see the [[CrocoBLAST:ReleaseNotes | Release notes]])