LiteMol:Use Cases: Difference between revisions
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
This page shows instructions for the most typical and most useful operations that LiteMol can perform. | This page shows instructions for the most typical and most useful operations that LiteMol can perform. | ||
{{col-begin}} | {{col-begin}} | ||
{{col-2}} | {{col-2}} | ||
=Basics= | =Basics= | ||
{{#evt: | {{#evt: | ||
| Line 14: | Line 15: | ||
|description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | |description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage. | ||
}} | }} | ||
{{col-2}} | {{col-2}} | ||
=Visual Representations= | =Visual Representations= | ||
| Line 24: | Line 26: | ||
|description=How to load electron density data and visualize density isosurfaces. | |description=How to load electron density data and visualize density isosurfaces. | ||
}} | }} | ||
{{col-end}} | {{col-end}} | ||
{{col-begin}} | |||
{{col-2}} | |||
=Visualization of Electron Density Maps= | =Visualization of Electron Density Maps= | ||
{{#evt: | |||
service=youtube | |||
|id=https://www.youtube.com/watch?v=obOKHFyXftM | |||
|alignment=center | |||
|dimensions=640x480 | |||
|autoresize=true | |||
|description=How to visualize electron density maps. | |||
}} | |||
{{col-2}} | |||
=Biological Assemblies And Crystal Symmetry= | =Biological Assemblies And Crystal Symmetry= | ||
{{#evt: | |||
service=youtube | |||
|id=https://www.youtube.com/watch?v=n-9yScdVzV8 | |||
|alignment=center | |||
|dimensions=640x480 | |||
|autoresize=true | |||
|description=Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice. | |||
}} | |||
{{col-end}} | |||
{{col-begin}} | |||
{{col-2}} | |||
=Visualizing PDBe Sequence Annotations And Validation Reports= | =Visualizing PDBe Sequence Annotations And Validation Reports= | ||
{{#evt: | |||
service=youtube | |||
|id=https://www.youtube.com/watch?v=C91ArK0hduU | |||
|alignment=center | |||
|dimensions=640x480 | |||
|autoresize=true | |||
|description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data. | |||
}} | |||
{{col-2}} | |||
=Using Selections= | =Using Selections= | ||
| Line 53: | Line 74: | ||
''The video is being prepared.'' | ''The video is being prepared.'' | ||
{{col-end}} | |||
Latest revision as of 13:58, 6 August 2016
This page shows instructions for the most typical and most useful operations that LiteMol can perform.
Basics[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=sG-8uU5gvoI | alignment=center | dimensions=640x480 | autoresize=true | description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.
}} |
Visual Representations[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=9EzoWh1_mFI | alignment=center | dimensions=640x480 | autoresize=true | description=How to load electron density data and visualize density isosurfaces.
}} |
Visualization of Electron Density Maps[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=obOKHFyXftM | alignment=center | dimensions=640x480 | autoresize=true | description=How to visualize electron density maps.
}} |
Biological Assemblies And Crystal Symmetry[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=n-9yScdVzV8 | alignment=center | dimensions=640x480 | autoresize=true | description=Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.
}} |
Visualizing PDBe Sequence Annotations And Validation Reports[edit]{{#evt: service=youtube |
id=https://www.youtube.com/watch?v=C91ArK0hduU | alignment=center | dimensions=640x480 | autoresize=true | description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
}} |
Using Selections[edit]How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains. The video is being prepared. |