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__NOTOC__
__NOTOC__


This page shows instructions for the most typical and useful operations that LiteMol can perform.
This page shows instructions for the most typical and most useful operations that LiteMol can perform.


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{{col-2}}
=Basics=
=Basics=
{{#evt:
service=youtube
|id=https://www.youtube.com/watch?v=sG-8uU5gvoI
|alignment=center
|dimensions=640x480
|autoresize=true
|description=Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.
}}


Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.
{{col-2}}
 
 
=Visual Representations=
=Visual Representations=
{{#evt:
service=youtube
|id=https://www.youtube.com/watch?v=9EzoWh1_mFI
|alignment=center
|dimensions=640x480
|autoresize=true
|description=How to load electron density data and visualize density isosurfaces.
}}


How to create and update visual representations of molecules, different types of representations and their parameters.
{{col-end}}


{{col-begin}}


{{col-2}}
=Visualization of Electron Density Maps=
=Visualization of Electron Density Maps=
{{#evt:
service=youtube
|id=https://www.youtube.com/watch?v=obOKHFyXftM
|alignment=center
|dimensions=640x480
|autoresize=true
|description=How to visualize electron density maps.
}}


How to load electron density data and visualize density isosurfaces.
{{col-2}}
 
 
=Biological Assemblies And Crystal Symmetry=
=Biological Assemblies And Crystal Symmetry=
{{#evt:
service=youtube
|id=https://www.youtube.com/watch?v=n-9yScdVzV8
|alignment=center
|dimensions=640x480
|autoresize=true
|description=Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.
}}


Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.
{{col-end}}


{{col-begin}}


{{col-2}}
=Visualizing PDBe Sequence Annotations And Validation Reports=
=Visualizing PDBe Sequence Annotations And Validation Reports=
{{#evt:
service=youtube
|id=https://www.youtube.com/watch?v=C91ArK0hduU
|alignment=center
|dimensions=640x480
|autoresize=true
|description=How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
}}


How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.
{{col-2}}
=Using Selections=


How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains.


=Using Selections=
''The video is being prepared.''


How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains.
{{col-end}}

Latest revision as of 13:58, 6 August 2016


This page shows instructions for the most typical and most useful operations that LiteMol can perform.

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