MotiveValidator:UserManual: Difference between revisions
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'''MotiveValidator''' is a platform for a set of applications designed to help you determine whether a residue or a ligand in a biomolecule or biomolecular complex is structurally complete and correctly annotated according to its models stored in the wwPDB Chemical Component Dictionary (wwPDB CCD). | '''MotiveValidator''' is a platform for a set of applications designed to help you determine whether a residue or a ligand in a biomolecule or biomolecular complex is structurally complete and correctly annotated according to its models stored in the wwPDB Chemical Component Dictionary (wwPDB CCD). | ||
Below you can find the '''MotiveValidator''' user manual, which contains all the information you need in order to make efficient use of '''MotiveValidator'''. Additional support is provided on the '''MotiveValidator''' web pages. When you first access the '''MotiveValidator''' page, you will find basic information in the '''Quick Help''' tab, and useful examples of database snippets in the '''Samples''' | Below you can find the '''MotiveValidator''' user manual, which contains all the information you need in order to make efficient use of '''MotiveValidator'''. Additional support is provided on the '''MotiveValidator''' web pages. When you first access the '''MotiveValidator''' page, you will find basic information in the '''Quick Help''' tab, and useful examples of database snippets in the '''Samples''' section. Moreover, various interactive guides are accessible at all times by a green button at the top right corner of some tabs. We recommend that you make use of these as often as you need. | ||
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===[[ | ===[[ValidatorDB:Terminology | Terminology]]=== | ||
* [[ | * [[ValidatorDB:Terminology#Residue | Residue ]] | ||
* [[ | * [[ValidatorDB:Terminology#Non-standard_residue | Non-standard residue ]] | ||
* [[ | * [[ValidatorDB:Terminology#Ligand | Ligand ]] | ||
* [[ | * [[ValidatorDB:Terminology#Molecule | Molecule ]] | ||
* [[ | * [[ValidatorDB:Terminology#Model | Model ]] | ||
* [[ | * [[ValidatorDB:Terminology#Input_motif | Input motif ]] | ||
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* [[MotiveValidator:Validation_modes#Sugar_Validation | Sugar Validation ]] | * [[MotiveValidator:Validation_modes#Sugar_Validation | Sugar Validation ]] | ||
* [[MotiveValidator:Validation_modes#Motif/Fragment_Validation | Motif/Fragment Validation ]] | * [[MotiveValidator:Validation_modes#Motif/Fragment_Validation | Motif/Fragment Validation ]] | ||
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===[[ValidatorDB:Database_contents | Issues detected]]=== | |||
* [[ValidatorDB:Database_contents#Incomplete structures | Incomplete structures ]] | |||
* [[ValidatorDB:Database_contents#Wrong chirality | Wrong chirality ]] | |||
* [[ValidatorDB:Database_contents#Warnings| Warnings ]] | |||
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===[[MotiveValidator:Service Organization| Service organization]]=== | ===[[MotiveValidator:Service Organization| Service organization]]=== | ||
*[[MotiveValidator:Service Organization| Synopsis page]] | *[[MotiveValidator:Service Organization#Synopsis page| Synopsis page]] | ||
*[[MotiveValidator:Service Organization| Specifics page]] | *[[MotiveValidator:Service Organization#Specifics page| Specifics page]] | ||
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===[[MotiveValidator: | ===[[MotiveValidator:Command Line Help | Command line version & Technical details ]]=== | ||
Latest revision as of 15:11, 10 August 2015
MotiveValidator is a platform for a set of applications designed to help you determine whether a residue or a ligand in a biomolecule or biomolecular complex is structurally complete and correctly annotated according to its models stored in the wwPDB Chemical Component Dictionary (wwPDB CCD).
Below you can find the MotiveValidator user manual, which contains all the information you need in order to make efficient use of MotiveValidator. Additional support is provided on the MotiveValidator web pages. When you first access the MotiveValidator page, you will find basic information in the Quick Help tab, and useful examples of database snippets in the Samples section. Moreover, various interactive guides are accessible at all times by a green button at the top right corner of some tabs. We recommend that you make use of these as often as you need.