SecStrAnnotator:SecStrAPI - Revision history

Midlik: /* SecStrAPI format */

2020-04-09T15:31:08Z

SecStrAPI format

← Older revision		Revision as of 15:31, 9 April 2020
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	}		}
	],		],
	"beta_connectivity": [ # list of connections between strands in a beta-~~sheet~~		"beta_connectivity": [ # list of connections between strands in beta-sheets
	[		[
	"1-1", # label of the first strand		"1-1", # label of the first strand

2020-04-07T07:56:35Z

← Older revision		Revision as of 07:56, 7 April 2020
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	<br><code>> annotate_sec_str 1tqn</code>]]		<br><code>> annotate_sec_str 1tqn</code>]]

	The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can also be easily visualized in PyMOL using SecStrAPI Plugin.		The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can also be easily visualized in PyMOL using [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin.py SecStrAPI Plugin].

2020-03-23T22:25:30Z

← Older revision		Revision as of 22:25, 23 March 2020
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	[[File:SecStrAnnotator-SecStrAPI-plugin.png \| thumb \| right \| ~~500px~~ \| ~~Using~~ SecStrAPI plugin in PyMOL.]]		[[File:SecStrAnnotator-SecStrAPI-plugin.png \| thumb \| right \| 600px \| Example of using SecStrAPI plugin in PyMOL:
			<br><code><nowiki>> run https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin.py</nowiki></code>
			<br><code>> annotate_sec_str 1tqn</code>]]

			The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can also be easily visualized in PyMOL using SecStrAPI Plugin.

	The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can be easily visualized in PyMOL using the [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin-1.3.py SecStrAPI Plugin].

	== Requests ==		== Requests ==
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	</ul>		</ul>


	== SecStrAPI format ==		== SecStrAPI format ==

2020-03-23T22:06:18Z

← Older revision		Revision as of 22:06, 23 March 2020
Line 1:		Line 1:
			[[File:SecStrAnnotator-SecStrAPI-plugin.png \| thumb \| right \| 500px \| Using SecStrAPI plugin in PyMOL.]]

	The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can be easily visualized in PyMOL using the [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin-1.3.py SecStrAPI Plugin].		The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can be easily visualized in PyMOL using the [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin-1.3.py SecStrAPI Plugin].

2020-03-23T20:01:12Z

← Older revision		Revision as of 20:01, 23 March 2020
Line 1:		Line 1:
	The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can be easily visualized in PyMOL ~~used~~ [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin-1.3.py SecStrAPI Plugin].		The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can be easily visualized in PyMOL using the [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin-1.3.py SecStrAPI Plugin].

	== Requests ==		== Requests ==

2020-03-23T20:00:13Z

← Older revision		Revision as of 20:00, 23 March 2020
Line 1:		Line 1:
	The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations.		The [https://webchem.ncbr.muni.cz/API/SecStr '''SecStrAPI'''] allows programmatic access to precomputed secondary structure annotations. The annotations from SecStrAPI can be easily visualized in PyMOL used [https://webchem.ncbr.muni.cz/API/SecStr/Downloads/secstrapi_plugin-1.3.py SecStrAPI Plugin].

	== Requests ==		== Requests ==

2020-03-22T15:23:24Z

SecStrAPI format

← Older revision		Revision as of 15:23, 22 March 2020
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	"pdb": "1tqn", # PDB ID		"pdb": "1tqn", # PDB ID
	"chain_id": "A", # mmcif-style chain identifier (label_asym_id) of the domain in the source database		"chain_id": "A", # mmcif-style chain identifier (label_asym_id) of the domain in the source database
	"ranges": "7:478" # mmcif-style residue range (label_seq_id) of the domain in the source database		"ranges": "7:478" # mmcif-style residue range (label_seq_id) of the domain in the source database (including the number before and after the colon)
	},		},
	{		{

2020-03-22T15:18:42Z

2020-03-22T14:07:19Z

SecStrAPI format

← Older revision		Revision as of 14:07, 22 March 2020
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	{		{
	"api_version": "1.0", # pdb-style residue range (auth_seq_id), ":" stands for the whole chain		"api_version": "1.0", # pdb-style residue range (auth_seq_id), : stands for the whole chain
	"annotations": { # pdb-style residue range (auth_seq_id), ":" stands for the whole chain		"annotations": { # pdb-style residue range (auth_seq_id), : stands for the whole chain
	"1tqn": {		"1tqn": { # blabalbal (h: helix, e: strand)
	"1tqnA": {		"1tqnA": {
	"pdb": "1tqn",		"pdb": "1tqn",

2020-03-22T14:00:20Z

SecStrAPI format