Main Page - Revision history

Midlik at 14:41, 9 April 2020

2020-04-09T14:41:22Z

← Older revision		Revision as of 14:41, 9 April 2020
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	=Structural Pattern Identification and Validation=		=Structural Pattern Identification and Validation=
	{{col-begin}}		{{col-begin}}
	{{col-3}}		{{col-4}}
	=== [[PatternQuery:UserManual \| PatternQuery]] ===		=== [[PatternQuery:UserManual \| PatternQuery]] ===
	:''Identification of molecular (sub)structures in the entire Protein Data Bank''		:''Identification of molecular (sub)structures in the entire Protein Data Bank''

	{{col-3}}		{{col-4}}

	=== [[MotiveValidator:UserManual \| MotiveValidator]] ===		=== [[MotiveValidator:UserManual \| MotiveValidator]] ===
	: ''Validation of annotation of ligands and non-standard residues in the protein structures''		: ''Validation of annotation of ligands and non-standard residues in the protein structures''

	{{col-3}}		{{col-4}}

	=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===		=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===
	:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''		:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''

			{{col-4}}

			=== [[SecStrAnnotator:UserManual \| SecStrAnnotator]] ===
			:''Annotation of the secondary structure elements in the protein structures''

	{{col-end}}		{{col-end}}

Crina: /* Bioinformatics tools */

2016-11-06T18:52:22Z

Bioinformatics tools

← Older revision		Revision as of 18:52, 6 November 2016
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	=== [[CrocoBLAST:UserManual \| CrocoBLAST]] ===		=== [[CrocoBLAST:UserManual \| CrocoBLAST]] ===
	:''Optimized parallel implementation of local sequence alignment algorithms''		:''Optimized parallel implementation of local sequence alignment algorithms''
	Current version: 1.16.7.28 (see the [[CrocoBLAST:ReleaseNotes \| Release notes]])		Current version: 1.16.11.04 (see the [[CrocoBLAST:ReleaseNotes \| Release notes]])

Crina: /* CrocoBLAST */

2016-07-21T03:36:19Z

CrocoBLAST

← Older revision		Revision as of 03:36, 21 July 2016
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	=== [[CrocoBLAST:UserManual \| CrocoBLAST]] ===		=== [[CrocoBLAST:UserManual \| CrocoBLAST]] ===
	:''Optimized parallel implementation of local sequence alignment algorithms''		:''Optimized parallel implementation of local sequence alignment algorithms''
			Current version: 1.16.7.28 (see the [[CrocoBLAST:ReleaseNotes \| Release notes]])

Crina at 03:28, 21 July 2016

2016-07-21T03:28:18Z

← Older revision		Revision as of 03:28, 21 July 2016
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	=== [[LiteMol:UserManual \| LiteMol]] ===		=== [[LiteMol:UserManual \| LiteMol]] ===
	:''Comprehensive visualization of (extremely large) protein structures''		:''Comprehensive visualization of (extremely large) protein structures''

			=Bioinformatics tools=

			=== [[CrocoBLAST:UserManual \| CrocoBLAST]] ===
			:''Optimized parallel implementation of local sequence alignment algorithms''

Lukas at 07:25, 23 June 2016

2016-06-23T07:25:11Z

← Older revision		Revision as of 07:25, 23 June 2016
Line 1:		Line 1:
	__NOTOC__		__NOTOC__

			=Structural Pattern Identification and Validation=
	{{col-begin}}		{{col-begin}}
	{{col-3}}		{{col-3}}

	=== [[PatternQuery:UserManual \| PatternQuery]] ===		=== [[PatternQuery:UserManual \| PatternQuery]] ===
	:''Identification of molecular (sub)structures in the entire Protein Data Bank''		:''Identification of molecular (sub)structures in the entire Protein Data Bank''

	~~=== [[LiteMol:UserManual \| LiteMol]] ===~~		{{col-3}}
	~~:''Comprehensive visualization of (extremely large) protein structures''~~

	~~{{col-3}}~~
	=== [[MotiveValidator:UserManual \| MotiveValidator]] ===		=== [[MotiveValidator:UserManual \| MotiveValidator]] ===
	: ''Validation of annotation of ligands and non-standard residues in the protein structures''		: ''Validation of annotation of ligands and non-standard residues in the protein structures''

			{{col-3}}

	=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===		=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===
	:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''		:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''

	{{col-3}}		{{col-end}}

			=EEM Charges Computation=
			{{col-begin}}
			{{col-2}}
	=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===		=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===
	:''Calculation of EEM charges for the small molecules as well as entire protein complexes''		:''Calculation of EEM charges for the small molecules as well as entire protein complexes''
			{{col-2}}
	=== [[NEEMP:UserManual \| NEEMP]] ===		=== [[NEEMP:UserManual \| NEEMP]] ===
	:''Toolkit for parametrization, calculaton and validation of EEM charges''		:''Toolkit for parametrization, calculaton and validation of EEM charges''
	{{col-end}}		{{col-end}}

			=Molecular Visualization=

			=== [[LiteMol:UserManual \| LiteMol]] ===
			:''Comprehensive visualization of (extremely large) protein structures''

Lukas: /* PatternQuery */

2016-06-11T10:08:15Z

PatternQuery

← Older revision		Revision as of 10:08, 11 June 2016
Line 5:		Line 5:

	=== [[PatternQuery:UserManual \| PatternQuery]] ===		=== [[PatternQuery:UserManual \| PatternQuery]] ===
	:''Identification of ~~structural~~ (sub)structures in the entire Protein Data Bank''		:''Identification of molecular (sub)structures in the entire Protein Data Bank''

	=== [[LiteMol:UserManual \| LiteMol]] ===		=== [[LiteMol:UserManual \| LiteMol]] ===

Lukas at 10:00, 11 June 2016

2016-06-11T10:00:06Z

← Older revision		Revision as of 10:00, 11 June 2016
Line 1:		Line 1:
	__NOTOC__		__NOTOC__

			{{col-begin}}
			{{col-3}}

	=== [[PatternQuery:UserManual \| PatternQuery]] ===		=== [[PatternQuery:UserManual \| PatternQuery]] ===
			:''Identification of structural (sub)structures in the entire Protein Data Bank''

			=== [[LiteMol:UserManual \| LiteMol]] ===
			:''Comprehensive visualization of (extremely large) protein structures''

			{{col-3}}
	=== [[MotiveValidator:UserManual \| MotiveValidator]] ===		=== [[MotiveValidator:UserManual \| MotiveValidator]] ===
			: ''Validation of annotation of ligands and non-standard residues in the protein structures''

	=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===		=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===
			:''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank''

			{{col-3}}
	=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===		=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===
			:''Calculation of EEM charges for the small molecules as well as entire protein complexes''
	~~=== [[LiteMol~~:~~UserManual \| LiteMol]] ===~~

	=== [[NEEMP:UserManual \| NEEMP]] ===		=== [[NEEMP:UserManual \| NEEMP]] ===
			:''Toolkit for parametrization, calculaton and validation of EEM charges''
			{{col-end}}

Lukas at 13:37, 26 May 2016

2016-05-26T13:37:34Z

← Older revision		Revision as of 13:37, 26 May 2016
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	=== [[LiteMol:UserManual \| LiteMol]] ===		=== [[LiteMol:UserManual \| LiteMol]] ===

			=== [[NEEMP:UserManual \| NEEMP]] ===

Lukas at 13:31, 26 May 2016

2016-05-26T13:31:08Z

← Older revision		Revision as of 13:31, 26 May 2016
Line 6:		Line 6:

	=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===		=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===

			=== [[LiteMol:UserManual \| LiteMol]] ===

Lukas: /* MotiveValidator */

2015-08-10T13:53:36Z

MotiveValidator

← Older revision		Revision as of 13:53, 10 August 2015
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	__NOTOC__		__NOTOC__
	=== [[PatternQuery:UserManual \| PatternQuery]] ===		=== [[PatternQuery:UserManual \| PatternQuery]] ===
	=== [[MotiveValidator]] ===		=== [[MotiveValidator:UserManual \| MotiveValidator]] ===

	=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===		=== [[ValidatorDB:UserManual \| Validator<sup>DB</sup>]] ===

	=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===		=== [[ChargeCalculator:UserManual \| AtomicChargeCalculator]] ===