Editing LiteMol:UserManual

__NOTOC__
[[File:LiteMol-logo.png | 350px | right]]
'''LiteMol''' is a web tool for visualization of molecular structures, particularly macromolecules. It is designed to be user-friendly yet flexible, interactive, and very fast even for extremely large protein structures. '''LiteMol''' can be run directly from your web browser.

Apart from the standard functionality expected of visualization tools, '''LiteMol''' can visualize electron densities and cryo-EM maps from which the models are derived. It can also display validation and annotation data from several databases on the model.

This user manual provides the necessary information about '''LiteMol's''' functionality and the instructions for its use. It also shows the most typical use cases with step-by-step instructions. Additional hints are available in '''LiteMol''' itself when hovering above the ''i'' icons.

'''LiteMol''' is available from the following address: [http://litemol.org litemol.org].

<br style="clear:both" />
----
===[[LiteMol:Introduction | Introduction]]===


===[[LiteMol:Hierarchy | Hierarchy of Entities]]===
#[[LiteMol:Hierarchy#Structures| Structures]]
#[[LiteMol:Hierarchy#Visualization| Visualization]]
#[[LiteMol:Hierarchy#Annotations | Annotations]]
#[[LiteMol:Hierarchy#Raw Data | Raw Data]]
----

===[[LiteMol:Functionality | Functionality]]===
#[[LiteMol:Functionality#Classic features| Features]]
#[[LiteMol:Functionality#Advanced features| Advanced]]
----

===[[LiteMol:SelectionAlgebra | Selection Algebra]]===
#[[LiteMol:SelectionAlgebra#Basic queries| Basic]]
#[[LiteMol:SelectionAlgebra#Advanced queries| Advanced]]
#[[LiteMol:SelectionAlgebra#Logical queries| Logical]]
----

===[[LiteMol:Use Cases | Use Cases]]===


===[[LiteMol:Embedding | Embedding in Your Web]]===


===[[LiteMol:Integration | Integration with other services]]===
----