Editing CrocoBLAST:UserManual (section)

== 1.1. Creating BLAST jobs ==
{| class="wikitable" border="1" style="margin: 1em auto 1em auto;" width="650px"
 |- 
 |<!--Col1-->'''a)''' Select the “Create BLAST job” tab.
 |<!--Col2-->'''b)''' Choose the desired BLAST program.
 |-
 |<!--Col1-->[[File:CrocoBLAST_addjob1.png|800x800px]]
 |<!--Col2-->[[File:CrocoBLAST addjob2.png|800x800px]]
 |- style="background: #313131;"
 |
 |
 |-
 |<!--Col1-->'''c)''' Choose the desired database
 |<!--Col2-->'''d)''' Choose the input file that will be aligned against the database
 |-
 |<!--Col1-->[[File:CrocoBLAST_addjob3.png|800x800px]]
 |<!--Col2-->[[File:CrocoBLAST addjob4.png|800x800px]]
 |- style="background: #313131;"
 |
 |
 |-
 |<!--Col1-->'''e)''' Choose the output folder in which the final alignment result will be created
 |<!--Col2-->'''f)''' Click on the “Add job to queue” button (note the log message below)
 |-
 |<!--Col1-->[[File:CrocoBLAST_addjob5.png|800x800px]]
 |<!--Col2-->[[File:CrocoBLAST addjob6.png|800x800px]]
 |- style="background: #313131;"
 |
 |
 |-
 |<!--Col1-->'''g)''' That is all! Your job should now be visible on the “Manage BLAST jobs” tab
 |-
 |<!--Col1-->[[File:CrocoBLAST_addjob7.png|800x800px]]
 |}

If no "--blast_options" are specified, CrocoBLAST will use all BLAST default values.

If no "--size_of_fragment" is specified, CrocoBLAST will take up to 5 seconds to auto-detect the ideal size for that job on your computer.

When you create a BLAST job, CrocoBLAST automatically assigns each BLAST job a unique job ID, and updates the CrocoBLAST queue.