Editing CrocoBLAST:UserManual (section)

==2.2. Adding a pre-formatted database from your computer==
If you have already downloaded the databases from NCBI, or if you do not have internet connection, you may add to the CrocoBLAST index database files stored on your computer. The following command can be used when you have pre-formatted database files (e.g., psq or nsq): 

{| class="wikitable" border="1" style="margin: 1em auto 1em auto;" width="650px"
 |- 
 |<!--Col1-->'''a)''' Select the “Manage databases” tab.
 |<!--Col2-->'''b)''' Select “From formatted BLAST database files” as a source for the database
 |-
 |<!--Col1-->[[File:CrocoBLAST AddFORMATTEDdatabase1.png|800x800px]]
 |<!--Col2-->[[File:CrocoBLAST AddFORMATTEDdatabase2.png|800x800px]]
 |- style="background: #313131;"
 |
 |
 |-
 |<!--Col1-->'''c)''' Select the type of database that you want to add
 |<!--Col2-->'''d)''' Choose the formatted database file containing the desired database
 |-
 |<!--Col1-->[[File:CrocoBLAST AddFORMATTEDdatabase3.png|800x800px]]
 |<!--Col2-->[[File:CrocoBLAST AddFORMATTEDdatabase4.png|800x800px]]
 |- style="background: #313131;"
 |
 |
 |-
 |<!--Col1-->'''e)''' Click the “Add formatted database” button (note the log message below). That is all!
 |-
 |<!--Col1-->[[File:CrocoBLAST AddFORMATTEDdatabase5.png|800x800px]]
 |}
 
Note that CrocoBLAST will assume that all database files related to the given ".nsq" file are contained in the same folder (which is most likely the case).