Editing MotiveValidator (section)

==Motif/Fragment Validation==
The third type of validation that can be performed using '''MotiveValidator''' can be initiated via the  Motif/Fragment Validation tab on the  submission page. The  Motif/Fragment Validation tab provides a brief description of the validation process, and several options for input file submission.

Remember that the term motif refers here to a fragment of a biomolecule or ligand, made up of one or more residues or parts of residues. Therefore, any set of atoms that can be defined as a motif within  the  '''MotiveValidator''' environment  can  be  validated  using  Motif/Fragment Validation. '''MotiveValidator''' will first read in the  model file and collect the structural information for all its atoms.  '''MotiveValidator''' will then read in the motif file and assign it a unique motif identifier. Then, the entire structure of the motif as a whole is validated against  the model, regardless of the residue names and identifiers in the motif file.