Jump to content
Main menu
Main menu
move to sidebar
hide
Navigation
Main page
Recent changes
Random page
Help about MediaWiki
Special pages
WebChemistry Wiki
Search
Search
Appearance
Create account
Log in
Personal tools
Create account
Log in
Pages for logged out editors
learn more
Contributions
Talk
Editing
ValidatorDB:Database contents
(section)
Page
Discussion
English
Read
Edit
View history
Tools
Tools
move to sidebar
hide
Actions
Read
Edit
View history
General
What links here
Related changes
Page information
Appearance
move to sidebar
hide
Warning:
You are not logged in. Your IP address will be publicly visible if you make any edits. If you
log in
or
create an account
, your edits will be attributed to your username, along with other benefits.
Anti-spam check. Do
not
fill this in!
=Incomplete structures= Validated molecules exhibiting an error in at least one of the ''Completeness'' analyses are denoted as ''incomplete'', whereas the remaining molecules are reported as ''complete''. ''Incomplete structures'' refer to molecules which lack some atoms, or whose structure is significantly distorted in comparison to the model: * '''Missing atoms''': An atom in the model has no corresponding atom in the validated molecule. * '''Missing rings''': At least one missing atom originates from cycles (rings). The formal distinction between ring atoms and non-ring atoms (simply denoted as atoms) is meant to allow a quick localization of potential issues in molecules containing rings, especially where atom identifiers are not useful. * '''Degenerate''': The molecules could not be validated due to their distorted structure, i.e. significant discrepancies between the atoms and inter-atomic bonds in the validated molecule and in the model. This generally happens when residues are overlapping in the 3D space, or some atoms appear disconnected from the rest of the structure. [[File:VDB incomplete.png|thumb|center|1100px| Potential issues found during the ''completeness'' analyses. All ''incomplete structures'' are marked in <span style="color:#FF0000">red</span> highlight]]
Summary:
Please note that all contributions to WebChemistry Wiki may be edited, altered, or removed by other contributors. If you do not want your writing to be edited mercilessly, then do not submit it here.
You are also promising us that you wrote this yourself, or copied it from a public domain or similar free resource (see
WebChemistry Wiki:Copyrights
for details).
Do not submit copyrighted work without permission!
Cancel
Editing help
(opens in new window)
Search
Search
Editing
ValidatorDB:Database contents
(section)
Add topic