WebChemistry Wiki mediawiki https://webchemwiki.biodata.ceitec.cz/Main_Page MediaWiki 1.45.3 first-letter Media Special Talk User User talk WebChemistry Wiki WebChemistry Wiki talk File File talk MediaWiki MediaWiki talk Template Template talk Help Help talk Category Category talk 0 1 2628 2343 2020-04-09T14:41:22Z Midlik 5 2628 wikitext text/x-wiki __NOTOC__ =Structural Pattern Identification and Validation= {{col-begin}} {{col-4}} === [[PatternQuery:UserManual | PatternQuery]] === :''Identification of molecular (sub)structures in the entire Protein Data Bank'' {{col-4}} === [[MotiveValidator:UserManual | MotiveValidator]] === : ''Validation of annotation of ligands and non-standard residues in the protein structures'' {{col-4}} === [[ValidatorDB:UserManual | Validator^DB]] === :''Validation of annotation of ligands and non-standard residues for the entire Protein Data Bank'' {{col-4}} === [[SecStrAnnotator:UserManual | SecStrAnnotator]] === :''Annotation of the secondary structure elements in the protein structures'' {{col-end}} =EEM Charges Computation= {{col-begin}} {{col-2}} === [[ChargeCalculator:UserManual | AtomicChargeCalculator]] === :''Calculation of EEM charges for the small molecules as well as entire protein complexes'' {{col-2}} === [[NEEMP:UserManual | NEEMP]] === :''Toolkit for parametrization, calculaton and validation of EEM charges'' {{col-end}} =Molecular Visualization= === [[LiteMol:UserManual | LiteMol]] === :''Comprehensive visualization of (extremely large) protein structures'' =Bioinformatics tools= === [[CrocoBLAST:UserManual | CrocoBLAST]] === :''Optimized parallel implementation of local sequence alignment algorithms'' Current version: 1.16.11.04 (see the [[CrocoBLAST:ReleaseNotes | Release notes]]) agk7opyr016hqqzx3aeqtmzsd0r1ilz